PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220346.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 254aa    MW: 28165.9 Da    PI: 8.6945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220346.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.6e-08162202954
                     HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  XP_008220346.1 162 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 202
                     699*****************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434153202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-13154212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-14157212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.4E-14159208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-6163202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.46E-6176207No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDIVQLKSEE QMEMMMMMQM DKISELCGAY NDVSDLPPSD HTFSTITTTT SPNSITSNTS  60
MPHYTDQQNP QNIPSPNSQS FLNLPTIPST ISFSNTTNLT DQTSNSSNGF LPSSQKRTSM  120
AAMREMIFRI AAMQPIHIDP ASVKPPKRRN VKISKDPQSV AARHRRERIS ERIRILQRLV  180
PGGTKMDTAS MLDEAIHYVK FLKSQVQTLE RAAADRPTGI GFPVAMSSGS YGLHSVAKAY  240
QASCHENVQH FGDA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894280.0KP689428.1 Prunus pseudocerasus isolate Unigene7666 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220346.10.0PREDICTED: transcription factor HEC1-like
SwissprotQ9FHA78e-49HEC1_ARATH; Transcription factor HEC1
TrEMBLA0A0U2S2811e-153A0A0U2S281_9R
STRINGVIT_18s0001g10400.t014e-82(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.17e-42bHLH family protein